The task is to simply take gly from day2 and run a short MD run with thermostats. They must set the target temperature for the electrons from thea avrage value they obtain in the constant energy run from the day2 excercises. The frequencies of the chains of thermostats come from the fast vibrations of the nuclei and electrons. in this example I throw out all the input files for the test of time step and first 10 step of MD. SInce the student does everything from scratch we give them nothing but tell them to go do it.