# vmd initialization file
#
# $Id: .vmdrc,v 1.3 2005/01/03 19:42:59 akohlmey Exp $
# Time-stamp: <akohlmey 01.01.2005 14:12:24 timburton.site>
#

# set display preferences.
display projection Orthographic
axes location off
color Display Background silver

light 0 on
light 1 on
light 2 off
light 3 off

# make sure, that main menu is active
menu main      on

# swap around some atom colors
color Name C green
color Name F lime
color Type C green
color Type F lime

# define a new, very transparent material 'Glass'
material add Glass
material change ambient   Glass 0.00
material change specular  Glass 0.50
material change diffuse   Glass 0.65
material change shininess Glass 0.53
material change opacity   Glass 0.15

# search for new molfile plugins in $HOME/vmd/plugins/$VMDARCH/molfile
# type 'vmdinfo arch' to find your name for $VMDARCH
vmd_plugin_scandirectory [file join $env(HOME) vmd/plugins [vmdinfo arch] molfile] *.so

# add our local (autoloaded) scripts directory to the search path
set auto_path [concat $env(HOME)/vmd/scripts/tcl $auto_path]

# command extensions (e.g. vmd_draw_vector) have to be sourced
foreach ext [glob -nocomplain $env(HOME)/vmd/scripts/extensions/*.tcl ] {
        source $ext
}
unset ext

proc my_def_viz {args} {
   mol delrep 0
   mol color Type
   mol representation CPK 1.000000 0.300000 19.000000 16.000000
   mol addrep top
}

# add 'default visualization' hack for the first three molecules.
#trace variable vmd_trajectory_read(0) w my_def_viz
#trace variable vmd_trajectory_read(1) w my_def_viz
#trace variable vmd_trajectory_read(2) w my_def_viz
# alternatively with vmd_initialize_structure
#trace variable vmd_initialize_structure(0) w my_def_viz
#trace variable vmd_initialize_structure(1) w my_def_viz
#trace variable vmd_initialize_structure(2) w my_def_viz


# make sure the main menu is active
menu main on

############################################################
# Local Variables:
# mode: tcl
# time-stamp-format: "%u %02d.%02m.%y %02H:%02M:%02S %s"
# End:
############################################################